I'm running several directories these days..
Deep Link Directory : It's a pay directory, but cheap, to keep the spammers away. And you can link to any page on your website.. And we allow multiple submissions in different categories..
Linkerbation : My fun directory.. It's tied to my new blog on link building.. It's free for now, but the acceptance rate is very low with a high quality requirement for the site being listed.
Lunker Links : Very niche specific, fishing websites only.. It's free right now, but if you aren't fishing related don't bother, I domain and IP ban on that directory and your domain get's passed around for deletion elsewhere.
If you are in to bid directories, give
Directory Bid a shot.. It's new but being heavily promoted.